Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP

Gül Olgun KARACAN; Reyhan ÇOLAK; Ercüment ÇOLAK

Makale detayları

Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP

Yazarlar:

Gül Olgun KARACAN | Reyhan ÇOLAK | Ercüment ÇOLAK

Yayıncı:

TUBITAK

Dergi:

Turkish Journal of Zoology 2015 Vol.39 Issue 4, pp.630-642

Belge Tipi:

Makale

Yayın Tarihi:

8/2015

Belge Dili:

Türkçe

Document ID (Org No.):

2000775017

Sıklık:

İki Aylık

eISSN:

1303-6114

pISSN:

1300-0179

Anahtar kelimeler:

Özet:

 

The rocky mouse, Apodemus mystacinus, is a rodent species distributed in Anatolia. A total of 108 specimens from 19 localities in Turkey were collected to study the molecular variation of A. Mystacinus inferred from RFLP of mtDNA cytochrome b (cytb) and D-loop. MboI, HaeIII, and RsaI from cytb digestion and MboI, BfaI, and HinfI from D-loop digestion showed differentiation among the studied specimens. The UPGMA dendrogram of the combined data of cytb and D-loop indicated 3 main clades, A. M. Euxinus, A. M. Mystacinus, and A. M. Smyrnensis, distributed in Turkey. The haplotype diversity observed in the present study was high. Furthermore, the fixation index values (FST) ranged from 0.75093 to 0.83384, which indicated high diversity among the clades. These 3 A. Mystacinus clades of Turkey were also supported by analysis of molecular variance (AMOVA) results, by revealing that genetic diversity was higher among groups (79.55%) than within the groups.

 

The rocky mouse, Apodemus mystacinus, is a rodent species distributed in Anatolia. A total of 108 specimens from 19 localities in Turkey were collected to study the molecular variation of A. Mystacinus inferred from RFLP of mtDNA cytochrome b (cytb) and D-loop. MboI, HaeIII, and RsaI from cytb digestion and MboI, BfaI, and HinfI from D-loop digestion showed differentiation among the studied specimens. The UPGMA dendrogram of the combined data of cytb and D-loop indicated 3 main clades, A. M. Euxinus, A. M. Mystacinus, and A. M. Smyrnensis, distributed in Turkey. The haplotype diversity observed in the present study was high. Furthermore, the fixation index values (FST) ranged from 0.75093 to 0.83384, which indicated high diversity among the clades. These 3 A. Mystacinus clades of Turkey were also supported by analysis of molecular variance (AMOVA) results, by revealing that genetic diversity was higher among groups (79.55%) than within the groups.

Makale detayları

Determination of genetic variations between Apodemus mystacinus populations distributed in Turkey inferred from mtDNA PCR-RFLP

Yazarlar: Gül Olgun KARACAN | Reyhan ÇOLAK | Ercüment ÇOLAK

Yayıncı: TUBITAK

Dergi: Turkish Journal of Zoology 2015 Vol.39 Issue 4, pp.630-642

Belge Tipi: Makale

Yayın Tarihi: 8/2015

Belge Dili: Türkçe

Document ID (Org No.): 2000775017

Sıklık: İki Aylık

eISSN: 1303-6114

pISSN: 1300-0179

Apodemus mystacinus

mtDNA

RFLP

cytochrome b

D-loop

Turkey

Sayı

Yazarlar:

Gül Olgun KARACAN | Reyhan ÇOLAK | Ercüment ÇOLAK

Yayıncı:

TUBITAK

Dergi:

Turkish Journal of Zoology 2015 Vol.39 Issue 4, pp.630-642

Belge Tipi:

Makale

Yayın Tarihi:

8/2015

Belge Dili:

Türkçe

Document ID (Org No.):

2000775017

Sıklık:

İki Aylık

eISSN:

1303-6114

pISSN:

1300-0179